Produção: Artigos Científicos em revistas indexadas


27. de OLIVEIRA, J.C.; da SILVA, A.L.D.; da SILVA, L.M.; FORMIGHIERI, E.F.; PETERS, L.P.; de ASSIS, G.M.L.;  da SILVA, C.C.; de SOUZA, A.P; de CAMPOS, T.  Novel Microsatellite Markers Derived from Arachis pintoi Transcriptome Sequencing for Cross-Species Transferability and Varietal Identification. Plant Mol Biol Rep, 2023. doi

26. TRICHEZ, D.; STEINDORFF, A.S.; MORAIS, W.G.; VILELA, N.; BERGMANN, J.C.; FORMIGHIERI, E.F.; GONÇALVES, S.B.; DE ALMEIDA, J.R.M. Identification of traits to improve co‑assimilation of glucose and xylose by adaptive evolution of Spathaspora passalidarum and Scheffersomyces stipitis yeasts. Applied Microbiology and Biotechnology, Published online: 10 January 2023. doi

25. STEINDORFF, A.S. ; SERRA, L.A. ; FORMIGHIERI, E.F.; DE FARIA, F.P. ; POÇAS-FONSECA, M.J. ; DE ALMEIDA, J.R.M. Insights into the Lignocellulose-Degrading Enzyme System of Humicola grisea var. thermoidea Based on Genome and Transcriptome Analysis. Microbiology Spectrum, v. 9, p. e01088-21, 2021. doi

24. PASCOAL. P.V.; RIBEIRO, D.M.; CEREIJO, C.R.; SANTANA, H.; NASCIMENTO, R.C.; STEINDORF, A.F.; CALSING, L.C.G.; FORMIGHIERI, E.F.; BRASIL, B.S.A.F.  Biochemical and phylogenetic characterization of the wastewater tolerant Chlamydomonas biconvexa Embrapa|LBA40 strain cultivated in palm oil mill effluent. PLoS ONE 16(4): e0249089, 2021 doi

23. PAES, B.G.; STEINDORFF, A.S. ; FORMIGHIERI, E. F. ; PEREIRA, I.S. ; ALMEIDA, J.R.M.  Physiological characterization and transcriptome analysis of Pichia pastoris reveals its response to lignocellulose-derived inhibitors. AMB Express, v. 11, p. 1, 2021. doi

22. PEREIRA, V. M.; FERREIRA FILHO, J. A.; LEÃO, A. P.; VARGAS, L. H. G.; FARIAS, M. P.; RIOS, S. A.; CUNHA, R. N. V.;  FORMIGHIERI, E. F.; ALVES, A. A.; JUNIOR, M. T. S. American oil palm (Elaeis oleifera (Kunth) Cortés) from Brazil ‐ Genetic diversity, population structure, and core collection. Crop Science, (accepted in 21 July) 2020 doi

21. TRICHEZ, D. ; STEINDORFF, ANDREI S. ; SOARES, C. E. V. F. ; FORMIGHIERI, E. F. ; ALMEIDA, J. R. M. . Physiological and comparative genomic analysis of new isolated yeasts Spathaspora sp. JA1 and Meyerozyma caribbica JA9 reveal insights into xylitol production. FEMS YEAST RESEARCH (ONLINE), v. 19, p. foz034, 2019. doi

20. SOUZA, W. R. ; PACHECO, T. F. ; DUARTE, K. E. ; SAMPAIO, B. L. ; MOLINARI, P. A. O. ; MARTINS, P. K. ; SANTIAGO, T. R. ; FORMIGHIERI, E. F. ; VINECKY, F. ; RIBEIRO, A. P. ; CUNHA, B. A. D. B. ; KOBAYASHI, A. K. ; MITCHELL, R. A. C. ; GAMBETTA, D. S. R. ; MOLINARI, H. B. C. . Silencing of a BAHD acyltransferase in sugarcane increases biomass digestibility. Biotechnology for Biofuels, v. 12, p. 1, 2019. doi

19. LAVIOLA, B. G., ALVES, A. A., ROSADO, T. B., BHERING, L. L., FORMIGHIERI, E. F., PEIXOTO, L. A. Establishment of new strategies to quantify and increase the variability in the Brazilian Jatropha genotypes. Industrial Crops and Products, v. 117, p. 216-223, 2018. doi

18. SANTIAGO T. R., PEREIRA V. M., de SOUZA W. R., STEINDORFF A. S., CUNHA B. A. D. B., GASPAR M., FÁVARO, L. C. L.; FORMIGHIERI, E. F.; KOBAYASHI, A. K.; MOLINARI, H. B. C.  Genome-wide identification, characterization and expression profile analysis of expansins gene family in sugarcane (Saccharum spp.). PLoS ONE 13(1): e0191081, 2018. doi

17. NAKAYAMA, THIAGO J.; RODRIGUES, FABIANA A ; NEUMAIER, NORMA ; MARCOLINO-GOMES, JULIAN ; MOLINARI, HUGO B. C.; SANTIAGO, THAÍS R.Formighieri, Eduardo F.; BASSO, MARCOS F.; FARIAS, JOSÉ R. B.; EMYGDIO, BEATRIZ M.; DE OLIVEIRA, ANA C. B.; CAMPOS, ÂNGELA D.; BORÉM, ALUÍZIO; HARMON, FRANK G.; MERTZ-HENNING, LILIANE M.; NEPOMUCENO, ALEXANDRE L. Insights into soybean transcriptome reconfiguration under hypoxic stress: Functional, regulatory, structural, and compositional characterization. PLoS One, v. 12, p. e0187920, 2017. doi

16. FERREIRA FILHO, J. A.; BRITO, L. S.; LEÃO, A. P.; ALVES, ALEXANDRE ALONSO; Formighieri, Eduardo F.; SOUZA JUNIOR, MANOEL TEIXEIRA . In Silico Approach for Characterization and Comparison of Repeats in the Genomes of Oil and Date Palms. Bioinformatics and Biology Insights, v. 11, p. 1-12, 2017. doi

15. ALVES, ALEXANDRE ALONSO ; LAVIOLA, BRUNO G. ; Formighieri, Eduardo F.; CARELS, NICOLAS . Perennial plants for biofuel production: Bridging genomics and field research. Biotechnology Journal (Print), v. 10, p. 505-507, 2015. doi

14. CAMILLO, JULCEIA; LEÃO, ANDRÉ PEREIRA; ALVES, ALEXANDRE ALONSO; Formighieri, Eduardo F.; AZEVEDO, ANA LUIZA SOUSA; NUNES, JULIANE DORNELLAS; DE CAPDVILLE, GUY; MATOS, JEAN KLEBER; SOUZA JUNIOR, MANOEL TEIXEIRA . Reassessment of the Genome Size in Elaeis guineensis and Elaeis oleifera, and Its Interspecific Hybrid. Genomics Insights, v. 7, p. 13-22, 2014. doi

13. ALVES, ALEXANDRE ALONSO ; BHERING, LEONARDO LOPES ; ROSADO, TATIANA BARBOSA ; LAVIOLA, BRUNO GALVÊAS ; Formighieri, Eduardo F.; CRUZ, COSME DAMIÃO . Joint analysis of phenotypic and molecular diversity provides new insights on the genetic variability of the brazilian physic nut germplasm bank. Genetics and Molecular Biology (Impresso), v. 36, p. 371-381, 2013. doi

12. Rincones, Johana ; Scarpari, Leandra M. ; Carazzolle, Marcelo F. ; Mondego, Jorge M. C. ; Formighieri, Eduardo F. ; Barau, J. G. ; Costa, Gustavo G. L. ; Carraro, Dirce M. ; Brentani, Helena P. ; Vilas-Boas, Laurival A. ; de Oliveira, Bruno V. ; Sabha, Maricene ; Dias, Robson ; Cascardo, Júlio M. ; AZEVEDO, R. A. ; Meinhardt, Lyndel W. ; Pereira, Gonçalo A. G. . Differential Gene Expression Between the Biotrophic-Like and Saprotrophic Mycelia of the Witches' Broom Pathogen. Molecular Plant-Microbe Interactions, v. 21, p. 891-908, 2008. doi

11. FORMIGHIERI, E. F.; TIBURCIO, R. A.; ARMAS, E. D.; Medrano, FJ; SHIMO, H. M.; CARELS, N.; GOES-NETO, A.; COTOMACCI, C.; CARAZZOLLE, M. F; SARDINHA-PINTO, N.; THOMAZELLA, D.P.T.; RINCONES, J.; DIGIAMPIETRI, L. A.; CARRARO, D. M.; AZEREDO-ESPIN, A. M.; REIS, S.; DECKMANN, A. C.; GRAMACHO, K.; GONCALVES, M S; MOURA-NETO, J. P.; BARBOSA, L.V.; MEINHARDT, L. W.; CASCARDO, J. C. M.; PEREIRA, G. A. G.. The mitochondrial genome of the phytopathogenic basidiomycete Moniliophthora perniciosa is 109kb in size and contains a stable integrated plasmid. Mycological Research, v. 112, p. 1136-1152, 2008. doi

10. Cardoso, Juliana Morini Kupper ; Oblessuc, Paula Rodrigues ; Campos, Tatiana de ; Sforça, Danilo Augusto ; Carbonell, Sérgio Augusto Moraes ; Chioratto, Alisson Fernando ; Formighieri, Eduardo F.; SOUZA, A. P. ; Benchimol, L. L. . New microsatellite markers developed from an enriched microsatellite common bean library. Pesquisa Agropecuária Brasileira (1977. Impressa), v. 43, p. 929-936, 2008. doi

9. Mondego JM, Carazzolle MF, Costa GG, Formighieri EF, Parizzi LP, Rincones J, Cotomacci C, Carraro DM, Cunha AF, Carrer H, Vidal RO, Estrela RC, García O, Thomazella DP, de Oliveira BV, Pires AB, Rio MC, Araújo MR, de Moraes MH, Castro LA, Gramacho KP, Gonçalves MS, Neto JP, Neto AG, Barbosa LV, Guiltinan MJ, Bailey BA, Meinhardt LW, Cascardo JC, Pereira GA. ; A genome survey of Moniliophthora perniciosa gives new insights into Witches' Broom Disease of cacao. BMC Genomics, v. 9, p. 548, 2008. doi

8. Hanai, Luiz Ricardo ; de Campos, Tatiana ; Camargo, Luis Eduardo Aranha ; Benchimol, L. L. ; de Souza, Anete Pereira ; Melotto, Maeli ; Carbonell, Sérgio Augusto Moraes ; Chioratto, Alisson Fernando ; Consoli, Luciano ; Formighieri, Eduardo F.; Siqueira, Marcos Vinícius Bohrer Monteiro ; Tsai, Siu Mui ; Vieira, Maria Lucia Carneiro . Development, characterization, and comparative analysis of polymorphism at common bean SSR loci isolated from genic and genomic sources. Pesquisa Agropecuária Brasileira (1977. Impressa), v. 50, p. 266-277, 2007. doi

7. Campos, Tatiana de ; Benchimol, L. L. ; Carbonell, Sérgio Augusto Moraes ; Chioratto, Alisson Fernando ; Formighieri, Eduardo F.; SOUZA, A. P. . Microsatellites for genetic studies and breeding programs in common bean. Pesquisa Agropecuária Brasileira, v. 42, p. 589-592, 2007. doi

6. Carazzolle, Marcelo F. ; Formighieri, Eduardo F. ; Digiampietri, Luciano A. ; Araujo, M. R. R. ; Costa, Gustavo G.L. ; Pereira, Gonçalo A.G. . Gene projects: a genome web tool for ongoing mining and annotation applied to CitEST. Genetics and Molecular Biology (Impresso), v. 30, p. 1030-1036, 2007. doi

5. AMARAL, A. M. ; Saito, Daniel; Formighieri, Eduardo F.; Rabello, Edenilson ; Souza, Adriane N. de ; Silva-Stenico, Maria Estela ; Tsai, Siu Mui . Identification of citrus expressed sequence tags (ESTs) encoding pleiotropic drug resistance (PDR)-like proteins. Genetics and Molecular Biology, v. 30, p. 857-865, 2007. doi

4. BENCHIMOL, L. L. ; CAMPOS, T. ; CARBONELL, S. A. M. ; COLOMBO, C. A. ; CHIORATTO, A. F. ; FORMIGHIERI, E. F. ; GOUVEA, L. R. L. ; SOUZA, A. P. . Structure of genetic diversity among common bean ( Phaseolus vulgaris L.) varieties of Mesoamerican and Andean origins using new developed microsatellite markers. Genetic Resources and Crop Evolution, v. 54, p. 1747-1762, 2007. doi

3. Luiz GE Vieira; Alan C Andrade; Carlos A Colombo; Ana HA Moraes; (...) ; Gustavo G Lacerda Costa; Eduardo F Formighieri; Marcelo F Carazzolle; Gonçalo AG Pereira ; Brazilian coffee genome project: an EST-based genomic resource. Brazilian Journal of Plant Physiology (Impresso), v. 18, p. 95-108, 2006. doi

2. Van Sluys MA, de Oliveira MC, Monteiro-Vitorello CB, Miyaki CY, Furlan LR, Camargo LE, da Silva AC, Moon DH, (...), Ferro JA, Formighieri EF, Kishi LT, Leoni SG, Oliveira AR, Rosa VE Jr, Sassaki FT, Sena JA, de Souza AA, Truffi D, Tsukumo F, Yanai GM, Zaros LG, Civerolo EL, Simpson AJ, Almeida NF Jr, Setubal JC, Kitajima JP. ; Comparative Analyses of the Complete Genome Sequences of Pierce´s Disease and Citrus variegated Chlorosis Strains of Xylella fastidiosa. Journal of Bacteriology (Print), v. 185, n.3, p. 1018-1026, 2003. doi

1. da Silva AC, Ferro JA, Reinach FC, Farah CS, Furlan LR, Quaggio RB, Monteiro-Vitorello CB, Van Sluys MA, Almeida NF, Alves LM, do Amaral AM, Bertolini MC, Camargo LE, Camarotte G, Cannavan F, Cardozo J, Chambergo F, Ciapina LP, Cicarelli RM, Coutinho LL, Cursino-Santos JR, El-Dorry H, Faria JB, Ferreira AJ, Ferreira RC, Ferro MI, Formighieri EF, (...), Tsai SM, White FF, Setubal JC, Kitajima JP. ; Comparison of the genomes of two Xanthomonas pathogens with differing host specificities. Nature (London), v. 417, n.6887, p. 459-463, 2002. doi